STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR55894.1Predicted dehydrogenase. (369 aa)    
Predicted Functional Partners:
SFR55883.1
Sugar phosphate isomerase/epimerase.
 
 
  0.903
SFR70829.1
Sugar phosphate isomerase/epimerase.
  
 
  0.737
SFR70839.1
Sugar phosphate isomerase/epimerase.
  
 
  0.710
SFR68580.1
Sugar phosphate isomerase/epimerase.
  
 
  0.705
SFR67066.1
Hexulose-6-phosphate isomerase.
  
 
  0.703
SFR67129.1
Sugar phosphate isomerase/epimerase.
  
 
  0.682
SFR74190.1
Predicted dehydrogenase.
  
     0.678
SFR73420.1
Predicted dehydrogenase.
  
     0.666
SFR74200.1
Sugar phosphate isomerase/epimerase.
  
 
  0.643
SFR67119.1
Predicted dehydrogenase.
  
     0.617
Your Current Organism:
Halogeometricum rufum
NCBI taxonomy Id: 553469
Other names: CGMCC 1.7736, H. rufum, Halogeometricum rufum Cui et al. 2010, Halosarcina sp. RO1-4, Halosarcina sp. RO1-64, JCM 15770, strain RO1-4
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.