STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR67437.1Membrane protease YdiL, CAAX protease family. (303 aa)    
Predicted Functional Partners:
SFR67446.1
Hypothetical protein.
 
     0.618
SFR54042.1
Ribosomal protein S12 methylthiotransferase accessory factor.
 
  
 0.521
SFR34463.1
Potassium/proton antiporter membrane subunit, CPA2 family.
   
    0.504
SFR35021.1
Hypothetical protein.
   
    0.499
SFR43429.1
ABC-2 type transport system permease protein.
  
    0.432
Your Current Organism:
Halogeometricum rufum
NCBI taxonomy Id: 553469
Other names: CGMCC 1.7736, H. rufum, Halogeometricum rufum Cui et al. 2010, Halosarcina sp. RO1-4, Halosarcina sp. RO1-64, JCM 15770, strain RO1-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.