STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR69932.1Multicopper oxidase. (383 aa)    
Predicted Functional Partners:
SFR69927.1
Halocyanin domain-containing protein.
 
 
  0.876
SFR63037.1
Chlorite dismutase.
  
 
 0.848
SFR69941.1
Halocyanin domain-containing protein.
 
 
  0.696
SFR69979.1
Nitric oxide reductase subunit B.
 
  
 0.556
SFR38643.1
Halocyanin domain-containing protein.
 
 
  0.536
SFR36424.1
Halocyanin domain-containing protein.
 
 
  0.528
SFR63360.1
Ferredoxin-nitrite reductase.
  
  
 0.520
SFR69347.1
Halocyanin domain-containing protein.
  
 
  0.520
SFR69304.1
pseudo-rSAM protein/SPASM domain protein.
   
  
 0.507
SFR44235.1
Plastocyanin.
  
 
  0.500
Your Current Organism:
Halogeometricum rufum
NCBI taxonomy Id: 553469
Other names: CGMCC 1.7736, H. rufum, Halogeometricum rufum Cui et al. 2010, Halosarcina sp. RO1-4, Halosarcina sp. RO1-64, JCM 15770, strain RO1-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.