ARF59187.1 protein (Streptomyces gilvosporeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ARF59187.1

Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)

Predicted Functional Partners:

ARF53144.1

0.592

ARF53145.1

0.552

ARF53143.1

0.509

ARF59607.1

0.444

ARF58207.1

0.406

Your Current Organism:

Streptomyces gilvosporeus

NCBI taxonomy Id: 553510
Other names: S. gilvosporeus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARF53143.1	ARF59187.1	B1H19_02170	B1H19_02175	Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.509
ARF53144.1	ARF53145.1	B1H19_02180	B1H19_02185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
ARF53144.1	ARF59187.1	B1H19_02180	B1H19_02175	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
ARF53145.1	ARF53144.1	B1H19_02185	B1H19_02180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
ARF53145.1	ARF59187.1	B1H19_02185	B1H19_02175	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
ARF58207.1	ARF59187.1	B1H19_32085	B1H19_02175	4-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
ARF59187.1	ARF53143.1	B1H19_02175	B1H19_02170	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.509
ARF59187.1	ARF53144.1	B1H19_02175	B1H19_02180	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
ARF59187.1	ARF53145.1	B1H19_02175	B1H19_02185	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
ARF59187.1	ARF58207.1	B1H19_02175	B1H19_32085	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
ARF59187.1	ARF59607.1	B1H19_02175	B1H19_21645	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
ARF59607.1	ARF59187.1	B1H19_21645	B1H19_02175	Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444