STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTM89_16420Unannotated protein. (517 aa)    
Predicted Functional Partners:
CTM89_16490
Unannotated protein.
 
 
 0.966
CTM89_16475
Unannotated protein.
 
  
  0.883
GCA_001557755_00664
Unannotated protein.
  
   0.867
CTM89_20515
Unannotated protein.
 
 0.732
rpoA
Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.725
rpoZ
Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.723
kduD
Unannotated protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   0.712
CTM89_16500
Unannotated protein.
 
     0.709
GCA_001557755_01949
Unannotated protein.
 
 0.700
GCA_001557755_03454
Unannotated protein.
    
 0.634
Your Current Organism:
Photobacterium leiognathi
NCBI taxonomy Id: 553611
Other names: ATCC 25521, CAIM 327, CCUG 16229, CIP 66.5, LMG 4228, LMG:4228, P. leiognathi, Photobacterium sp. CMB_001
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.