Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CRG86_008790 | thiL | GCA_001557755_00470 | GCA_001557755_01385 | Unannotated protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | Unannotated protein; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. | 0.844 |
CTM89_00805 | CTM89_02655 | GCA_001557755_02606 | GCA_001557755_00161 | Unannotated protein. | Unannotated protein. | 0.551 |
CTM89_00805 | CTM89_14175 | GCA_001557755_02606 | GCA_001557755_01809 | Unannotated protein. | Unannotated protein. | 0.934 |
CTM89_00805 | CTM89_14185 | GCA_001557755_02606 | GCA_001557755_01807 | Unannotated protein. | Unannotated protein; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). | 0.867 |
CTM89_00805 | rsgA | GCA_001557755_02606 | GCA_001557755_01125 | Unannotated protein. | Unannotated protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.549 |
CTM89_00805 | thiD | GCA_001557755_02606 | GCA_001557755_00972 | Unannotated protein. | Unannotated protein. | 0.867 |
CTM89_00805 | thiL | GCA_001557755_02606 | GCA_001557755_01385 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. | 0.669 |
CTM89_02655 | CTM89_00805 | GCA_001557755_00161 | GCA_001557755_02606 | Unannotated protein. | Unannotated protein. | 0.551 |
CTM89_02655 | CTM89_14185 | GCA_001557755_00161 | GCA_001557755_01807 | Unannotated protein. | Unannotated protein; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). | 0.847 |
CTM89_02655 | rsgA | GCA_001557755_00161 | GCA_001557755_01125 | Unannotated protein. | Unannotated protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.716 |
CTM89_02655 | thiD | GCA_001557755_00161 | GCA_001557755_00972 | Unannotated protein. | Unannotated protein. | 0.623 |
CTM89_02655 | thiL | GCA_001557755_00161 | GCA_001557755_01385 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. | 0.774 |
CTM89_09960 | thiL | GCA_001557755_01389 | GCA_001557755_01385 | Unannotated protein; Belongs to the FPP/GGPP synthase family. | Unannotated protein; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. | 0.709 |
CTM89_09970 | nusB | GCA_001557755_01386 | GCA_001557755_01384 | Unannotated protein; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG). | Unannotated protein; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.571 |
CTM89_09970 | thiL | GCA_001557755_01386 | GCA_001557755_01385 | Unannotated protein; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG). | Unannotated protein; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. | 0.817 |
CTM89_14175 | CTM89_00805 | GCA_001557755_01809 | GCA_001557755_02606 | Unannotated protein. | Unannotated protein. | 0.934 |
CTM89_14175 | CTM89_14185 | GCA_001557755_01809 | GCA_001557755_01807 | Unannotated protein. | Unannotated protein; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). | 0.995 |
CTM89_14175 | thiD | GCA_001557755_01809 | GCA_001557755_00972 | Unannotated protein. | Unannotated protein. | 0.929 |
CTM89_14175 | thiL | GCA_001557755_01809 | GCA_001557755_01385 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. | 0.776 |
CTM89_14185 | CTM89_00805 | GCA_001557755_01807 | GCA_001557755_02606 | Unannotated protein; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). | Unannotated protein. | 0.867 |
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