B7463_g12225 protein (Scytalidium lignicola)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B7463_g12225

RRM domain-containing protein. (601 aa)

Predicted Functional Partners:

B7463_g6475

0.869

B7463_g10356

0.659

B7463_g10713

0.655

B7463_g988

0.641

B7463_g4476

0.632

B7463_g7547

0.618

B7463_g6155

0.611

B7463_g243

0.611

B7463_g1135

0.610

B7463_g7973

0.605

Your Current Organism:

Scytalidium lignicola

NCBI taxonomy Id: 5539
Other names: CBS 233.57, IMI 062532, MUCL 4172, S. lignicola, UAMH 385

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B7463_g10356	B7463_g10713	A0A3E2GXX3	A0A3E2GX96	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.999
B7463_g10356	B7463_g12225	A0A3E2GXX3	A0A3E2GSD9	Uncharacterized protein.	RRM domain-containing protein.	0.659
B7463_g10356	B7463_g243	A0A3E2GXX3	A0A3E2HRZ3	Uncharacterized protein.	RRM domain-containing protein.	0.574
B7463_g10356	B7463_g4476	A0A3E2GXX3	A0A3E2HET5	Uncharacterized protein.	Matrin-type domain-containing protein.	0.920
B7463_g10356	B7463_g6155	A0A3E2GXX3	A0A3E2H9W7	Uncharacterized protein.	Uncharacterized protein.	0.574
B7463_g10356	B7463_g7547	A0A3E2GXX3	A0A3E2H5Y7	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.974
B7463_g10356	B7463_g7973	A0A3E2GXX3	A0A3E2H4R5	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.960
B7463_g10356	B7463_g988	A0A3E2GXX3	A0A3E2HPS2	Uncharacterized protein.	Uncharacterized protein.	0.951
B7463_g10713	B7463_g10356	A0A3E2GX96	A0A3E2GXX3	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.999
B7463_g10713	B7463_g12225	A0A3E2GX96	A0A3E2GSD9	Nuclear cap-binding protein subunit 2.	RRM domain-containing protein.	0.655
B7463_g10713	B7463_g243	A0A3E2GX96	A0A3E2HRZ3	Nuclear cap-binding protein subunit 2.	RRM domain-containing protein.	0.931
B7463_g10713	B7463_g4476	A0A3E2GX96	A0A3E2HET5	Nuclear cap-binding protein subunit 2.	Matrin-type domain-containing protein.	0.978
B7463_g10713	B7463_g6155	A0A3E2GX96	A0A3E2H9W7	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.903
B7463_g10713	B7463_g7547	A0A3E2GX96	A0A3E2H5Y7	Nuclear cap-binding protein subunit 2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.995
B7463_g10713	B7463_g7973	A0A3E2GX96	A0A3E2H4R5	Nuclear cap-binding protein subunit 2.	Small nuclear ribonucleoprotein G.	0.994
B7463_g10713	B7463_g988	A0A3E2GX96	A0A3E2HPS2	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.969
B7463_g1135	B7463_g12225	A0A3E2HPN9	A0A3E2GSD9	Tr-type G domain-containing protein.	RRM domain-containing protein.	0.610
B7463_g12225	B7463_g10356	A0A3E2GSD9	A0A3E2GXX3	RRM domain-containing protein.	Uncharacterized protein.	0.659
B7463_g12225	B7463_g10713	A0A3E2GSD9	A0A3E2GX96	RRM domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.655
B7463_g12225	B7463_g1135	A0A3E2GSD9	A0A3E2HPN9	RRM domain-containing protein.	Tr-type G domain-containing protein.	0.610