B7463_g12114 protein (Scytalidium lignicola)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B7463_g12114

UDENN FLCN/SMCR8-type domain-containing protein. (394 aa)

Predicted Functional Partners:

B7463_g10119

0.979

B7463_g5615

0.979

B7463_g470

0.917

B7463_g3539

0.854

B7463_g1204

0.854

B7463_g7247

0.755

B7463_g10611

0.737

B7463_g6328

0.725

B7463_g6154

0.714

B7463_g3839

0.705

Your Current Organism:

Scytalidium lignicola

NCBI taxonomy Id: 5539
Other names: CBS 233.57, IMI 062532, MUCL 4172, S. lignicola, UAMH 385

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B7463_g10119	B7463_g10611	A0A3E2GYL0	A0A3E2GX41	Uncharacterized protein.	Pyruvate carboxyltransferase domain-containing protein.	0.758
B7463_g10119	B7463_g1204	A0A3E2GYL0	A0A3E2HP19	Uncharacterized protein.	Uncharacterized protein.	0.958
B7463_g10119	B7463_g12114	A0A3E2GYL0	A0A3E2GSY8	Uncharacterized protein.	UDENN FLCN/SMCR8-type domain-containing protein.	0.979
B7463_g10119	B7463_g3539	A0A3E2GYL0	A0A3E2HHZ0	Uncharacterized protein.	Uncharacterized protein.	0.958
B7463_g10119	B7463_g3839	A0A3E2GYL0	A0A3E2HH77	Uncharacterized protein.	Uncharacterized protein.	0.692
B7463_g10119	B7463_g470	A0A3E2GYL0	A0A3E2HS60	Uncharacterized protein.	J domain-containing protein.	0.766
B7463_g10119	B7463_g5615	A0A3E2GYL0	A0A3E2HC70	Uncharacterized protein.	FAD-binding PCMH-type domain-containing protein.	0.998
B7463_g10119	B7463_g6154	A0A3E2GYL0	A0A3E2H9T5	Uncharacterized protein.	Uncharacterized protein.	0.716
B7463_g10119	B7463_g6328	A0A3E2GYL0	A0A3E2H9H1	Uncharacterized protein.	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.690
B7463_g10119	B7463_g7247	A0A3E2GYL0	A0A3E2H6R8	Uncharacterized protein.	Uncharacterized protein.	0.723
B7463_g10611	B7463_g10119	A0A3E2GX41	A0A3E2GYL0	Pyruvate carboxyltransferase domain-containing protein.	Uncharacterized protein.	0.758
B7463_g10611	B7463_g1204	A0A3E2GX41	A0A3E2HP19	Pyruvate carboxyltransferase domain-containing protein.	Uncharacterized protein.	0.832
B7463_g10611	B7463_g12114	A0A3E2GX41	A0A3E2GSY8	Pyruvate carboxyltransferase domain-containing protein.	UDENN FLCN/SMCR8-type domain-containing protein.	0.737
B7463_g10611	B7463_g3539	A0A3E2GX41	A0A3E2HHZ0	Pyruvate carboxyltransferase domain-containing protein.	Uncharacterized protein.	0.832
B7463_g10611	B7463_g3839	A0A3E2GX41	A0A3E2HH77	Pyruvate carboxyltransferase domain-containing protein.	Uncharacterized protein.	0.999
B7463_g10611	B7463_g470	A0A3E2GX41	A0A3E2HS60	Pyruvate carboxyltransferase domain-containing protein.	J domain-containing protein.	0.559
B7463_g10611	B7463_g5615	A0A3E2GX41	A0A3E2HC70	Pyruvate carboxyltransferase domain-containing protein.	FAD-binding PCMH-type domain-containing protein.	0.852
B7463_g10611	B7463_g6154	A0A3E2GX41	A0A3E2H9T5	Pyruvate carboxyltransferase domain-containing protein.	Uncharacterized protein.	0.999
B7463_g10611	B7463_g6328	A0A3E2GX41	A0A3E2H9H1	Pyruvate carboxyltransferase domain-containing protein.	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.998
B7463_g10611	B7463_g7247	A0A3E2GX41	A0A3E2H6R8	Pyruvate carboxyltransferase domain-containing protein.	Uncharacterized protein.	0.999