B7463_g11035 protein (Scytalidium lignicola)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B7463_g11035

Chalcone_isomerase domain-containing protein. (394 aa)

Predicted Functional Partners:

B7463_g5976

0.921

B7463_g1483

0.918

B7463_g3814

0.905

B7463_g9588

0.902

B7463_g1247

0.898

B7463_g5250

0.765

B7463_g4552

0.681

B7463_g4542

0.681

B7463_g12553

0.654

B7463_g8052

0.654

Your Current Organism:

Scytalidium lignicola

NCBI taxonomy Id: 5539
Other names: CBS 233.57, IMI 062532, MUCL 4172, S. lignicola, UAMH 385

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B7463_g11035	B7463_g1247	A0A3E2GW11	A0A3E2HPX8	Chalcone_isomerase domain-containing protein.	SP-RING-type domain-containing protein.	0.898
B7463_g11035	B7463_g12553	A0A3E2GW11	A0A3E2GRV7	Chalcone_isomerase domain-containing protein.	SMC_N domain-containing protein.	0.654
B7463_g11035	B7463_g1483	A0A3E2GW11	A0A3E2HNA8	Chalcone_isomerase domain-containing protein.	zf-RING-like domain-containing protein.	0.918
B7463_g11035	B7463_g3814	A0A3E2GW11	A0A3E2HGD8	Chalcone_isomerase domain-containing protein.	SMC_N domain-containing protein.	0.905
B7463_g11035	B7463_g4542	A0A3E2GW11	A0A3E2HF42	Chalcone_isomerase domain-containing protein.	Uncharacterized protein.	0.681
B7463_g11035	B7463_g4552	A0A3E2GW11	A0A3E2HEG3	Chalcone_isomerase domain-containing protein.	SMC hinge domain-containing protein.	0.681
B7463_g11035	B7463_g5250	A0A3E2GW11	A0A3E2HCG6	Chalcone_isomerase domain-containing protein.	SMC hinge domain-containing protein.	0.765
B7463_g11035	B7463_g5976	A0A3E2GW11	A0A3E2HB36	Chalcone_isomerase domain-containing protein.	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	0.921
B7463_g11035	B7463_g8052	A0A3E2GW11	A0A3E2H4G5	Chalcone_isomerase domain-containing protein.	MOSC domain-containing protein.	0.654
B7463_g11035	B7463_g9588	A0A3E2GW11	A0A3E2H027	Chalcone_isomerase domain-containing protein.	SMC_N domain-containing protein.	0.902
B7463_g1247	B7463_g11035	A0A3E2HPX8	A0A3E2GW11	SP-RING-type domain-containing protein.	Chalcone_isomerase domain-containing protein.	0.898
B7463_g1247	B7463_g12553	A0A3E2HPX8	A0A3E2GRV7	SP-RING-type domain-containing protein.	SMC_N domain-containing protein.	0.854
B7463_g1247	B7463_g1483	A0A3E2HPX8	A0A3E2HNA8	SP-RING-type domain-containing protein.	zf-RING-like domain-containing protein.	0.998
B7463_g1247	B7463_g3814	A0A3E2HPX8	A0A3E2HGD8	SP-RING-type domain-containing protein.	SMC_N domain-containing protein.	0.998
B7463_g1247	B7463_g4542	A0A3E2HPX8	A0A3E2HF42	SP-RING-type domain-containing protein.	Uncharacterized protein.	0.859
B7463_g1247	B7463_g4552	A0A3E2HPX8	A0A3E2HEG3	SP-RING-type domain-containing protein.	SMC hinge domain-containing protein.	0.859
B7463_g1247	B7463_g5250	A0A3E2HPX8	A0A3E2HCG6	SP-RING-type domain-containing protein.	SMC hinge domain-containing protein.	0.889
B7463_g1247	B7463_g5976	A0A3E2HPX8	A0A3E2HB36	SP-RING-type domain-containing protein.	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	0.996
B7463_g1247	B7463_g8052	A0A3E2HPX8	A0A3E2H4G5	SP-RING-type domain-containing protein.	MOSC domain-containing protein.	0.871
B7463_g1247	B7463_g9588	A0A3E2HPX8	A0A3E2H027	SP-RING-type domain-containing protein.	SMC_N domain-containing protein.	0.998