STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7463_g10210RNase H domain-containing protein. (377 aa)    
Predicted Functional Partners:
B7463_g2971
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
   
 
 0.866
B7463_g5625
Nucleoside diphosphate kinase.
     
 0.735
B7463_g6651
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
    
 0.728
B7463_g5736
CMP/dCMP-type deaminase domain-containing protein.
 
  
 
 0.718
B7463_g311
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.699
B7463_g11088
Uncharacterized protein.
   
 
 0.682
B7463_g12295
Flavoprotein domain-containing protein.
  
 
 0.675
B7463_g10798
Thymidylat_synt domain-containing protein.
  
 
 0.675
B7463_g2919
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.673
B7463_g2576
Gp_dh_N domain-containing protein; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
    
 0.673
Your Current Organism:
Scytalidium lignicola
NCBI taxonomy Id: 5539
Other names: CBS 233.57, IMI 062532, MUCL 4172, S. lignicola, UAMH 385
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