B7463_g9828 protein (Scytalidium lignicola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B7463_g9828

Uncharacterized protein. (880 aa)

Predicted Functional Partners:

B7463_g12566

0.983

B7463_g2001

0.979

B7463_g2764

0.938

B7463_g9961

0.929

B7463_g6664

0.926

B7463_g6334

0.923

B7463_g4450

0.917

B7463_g6333

0.915

B7463_g11021

0.907

B7463_g3456

0.903

Your Current Organism:

Scytalidium lignicola

NCBI taxonomy Id: 5539
Other names: CBS 233.57, IMI 062532, MUCL 4172, S. lignicola, UAMH 385

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B7463_g11021	B7463_g12566	A0A3E2GW37	A0A3E2GRF4	UBIQUITIN_CONJUGAT_2 domain-containing protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.865
B7463_g11021	B7463_g2001	A0A3E2GW37	A0A3E2HLS0	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.995
B7463_g11021	B7463_g2764	A0A3E2GW37	A0A3E2HKK9	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.795
B7463_g11021	B7463_g4450	A0A3E2GW37	A0A3E2HEP9	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Importin N-terminal domain-containing protein.	0.478
B7463_g11021	B7463_g6333	A0A3E2GW37	A0A3E2H9L9	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.801
B7463_g11021	B7463_g6334	A0A3E2GW37	A0A3E2H9A7	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.999
B7463_g11021	B7463_g6664	A0A3E2GW37	A0A3E2H8E3	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.757
B7463_g11021	B7463_g9828	A0A3E2GW37	A0A3E2GZV9	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.907
B7463_g11021	B7463_g9961	A0A3E2GW37	A0A3E2GZ35	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.753
B7463_g12566	B7463_g11021	A0A3E2GRF4	A0A3E2GW37	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.865
B7463_g12566	B7463_g2001	A0A3E2GRF4	A0A3E2HLS0	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Uncharacterized protein.	0.997
B7463_g12566	B7463_g2764	A0A3E2GRF4	A0A3E2HKK9	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Uncharacterized protein.	0.720
B7463_g12566	B7463_g4450	A0A3E2GRF4	A0A3E2HEP9	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Importin N-terminal domain-containing protein.	0.992
B7463_g12566	B7463_g6333	A0A3E2GRF4	A0A3E2H9L9	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.756
B7463_g12566	B7463_g6334	A0A3E2GRF4	A0A3E2H9A7	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Ubiquitin-like domain-containing protein.	0.816
B7463_g12566	B7463_g6664	A0A3E2GRF4	A0A3E2H8E3	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Uncharacterized protein.	0.689
B7463_g12566	B7463_g9828	A0A3E2GRF4	A0A3E2GZV9	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Uncharacterized protein.	0.983
B7463_g12566	B7463_g9961	A0A3E2GRF4	A0A3E2GZ35	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Uncharacterized protein.	0.660
B7463_g2001	B7463_g11021	A0A3E2HLS0	A0A3E2GW37	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.995
B7463_g2001	B7463_g12566	A0A3E2HLS0	A0A3E2GRF4	Uncharacterized protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.997