B7463_g4305 protein (Scytalidium lignicola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B7463_g4305

Protein kinase domain-containing protein. (383 aa)

Predicted Functional Partners:

B7463_g4307

0.869

B7463_g2731

0.602

B7463_g4306

0.492

B7463_g2417

0.482

B7463_g6665

0.481

B7463_g9603

0.472

B7463_g11798

0.420

B7463_g1613

0.420

B7463_g12387

0.414

B7463_g242

0.412

Your Current Organism:

Scytalidium lignicola

NCBI taxonomy Id: 5539
Other names: CBS 233.57, IMI 062532, MUCL 4172, S. lignicola, UAMH 385

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B7463_g11798	B7463_g4305	A0A3E2GTX3	A0A3E2HEZ8	AMP_N domain-containing protein.	Protein kinase domain-containing protein.	0.420
B7463_g11798	B7463_g4306	A0A3E2GTX3	A0A3E2HG19	AMP_N domain-containing protein.	Peptidase_S9 domain-containing protein.	0.461
B7463_g12387	B7463_g4305	A0A3E2GRX5	A0A3E2HEZ8	Uncharacterized protein.	Protein kinase domain-containing protein.	0.414
B7463_g1613	B7463_g4305	A0A3E2HMY3	A0A3E2HEZ8	Uncharacterized protein.	Protein kinase domain-containing protein.	0.420
B7463_g1613	B7463_g4306	A0A3E2HMY3	A0A3E2HG19	Uncharacterized protein.	Peptidase_S9 domain-containing protein.	0.461
B7463_g2417	B7463_g242	A0A3E2HKM0	A0A3E2HRX8	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	WD_REPEATS_REGION domain-containing protein.	0.518
B7463_g2417	B7463_g4305	A0A3E2HKM0	A0A3E2HEZ8	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Protein kinase domain-containing protein.	0.482
B7463_g242	B7463_g2417	A0A3E2HRX8	A0A3E2HKM0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.518
B7463_g242	B7463_g4305	A0A3E2HRX8	A0A3E2HEZ8	WD_REPEATS_REGION domain-containing protein.	Protein kinase domain-containing protein.	0.412
B7463_g2731	B7463_g4305	A0A3E2HJJ4	A0A3E2HEZ8	Protein phosphatase; Belongs to the PP2C family.	Protein kinase domain-containing protein.	0.602
B7463_g4305	B7463_g11798	A0A3E2HEZ8	A0A3E2GTX3	Protein kinase domain-containing protein.	AMP_N domain-containing protein.	0.420
B7463_g4305	B7463_g12387	A0A3E2HEZ8	A0A3E2GRX5	Protein kinase domain-containing protein.	Uncharacterized protein.	0.414
B7463_g4305	B7463_g1613	A0A3E2HEZ8	A0A3E2HMY3	Protein kinase domain-containing protein.	Uncharacterized protein.	0.420
B7463_g4305	B7463_g2417	A0A3E2HEZ8	A0A3E2HKM0	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.482
B7463_g4305	B7463_g242	A0A3E2HEZ8	A0A3E2HRX8	Protein kinase domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.412
B7463_g4305	B7463_g2731	A0A3E2HEZ8	A0A3E2HJJ4	Protein kinase domain-containing protein.	Protein phosphatase; Belongs to the PP2C family.	0.602
B7463_g4305	B7463_g4306	A0A3E2HEZ8	A0A3E2HG19	Protein kinase domain-containing protein.	Peptidase_S9 domain-containing protein.	0.492
B7463_g4305	B7463_g4307	A0A3E2HEZ8	A0A3E2HF24	Protein kinase domain-containing protein.	CAP-Gly domain-containing protein.	0.869
B7463_g4305	B7463_g6665	A0A3E2HEZ8	A0A3E2H8D6	Protein kinase domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.481
B7463_g4305	B7463_g9603	A0A3E2HEZ8	A0A3E2H051	Protein kinase domain-containing protein.	S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	0.472