STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7463_g2424Uncharacterized protein; Belongs to the DEAD box helicase family. (589 aa)    
Predicted Functional Partners:
B7463_g6888
Sas10 domain-containing protein.
   
 0.995
B7463_g5753
Uncharacterized protein.
   
 0.986
B7463_g10935
WD_REPEATS_REGION domain-containing protein.
   
 0.983
B7463_g1587
Uncharacterized protein.
  
0.982
B7463_g6418
U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.
   
 
 0.978
B7463_g3812
U3 small nucleolar RNA-associated protein 22.
   
 0.978
B7463_g4028
KH domain-containing protein.
   
 0.977
B7463_g8649
Uncharacterized protein.
   
 0.975
B7463_g1416
Uncharacterized protein.
   
 0.973
B7463_g10485
CBF domain-containing protein.
   
 0.971
Your Current Organism:
Scytalidium lignicola
NCBI taxonomy Id: 5539
Other names: CBS 233.57, IMI 062532, MUCL 4172, S. lignicola, UAMH 385
Server load: low (24%) [HD]