B7463_g1984 protein (Scytalidium lignicola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B7463_g1984

Exonuclease domain-containing protein. (748 aa)

Predicted Functional Partners:

B7463_g12138

0.919

B7463_g6651

0.875

B7463_g25

0.780

B7463_g2123

0.765

B7463_g856

0.765

B7463_g6851

0.692

B7463_g5222

0.689

B7463_g4671

0.689

B7463_g2308

0.688

B7463_g3742

0.633

Your Current Organism:

Scytalidium lignicola

NCBI taxonomy Id: 5539
Other names: CBS 233.57, IMI 062532, MUCL 4172, S. lignicola, UAMH 385

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B7463_g12138	B7463_g1984	A0A3E2GSZ5	A0A3E2HLP1	Pan3_PK domain-containing protein.	Exonuclease domain-containing protein.	0.919
B7463_g12138	B7463_g2123	A0A3E2GSZ5	A0A3E2HLD4	Pan3_PK domain-containing protein.	Exonuclease domain-containing protein.	0.919
B7463_g12138	B7463_g4671	A0A3E2GSZ5	A0A3E2HE32	Pan3_PK domain-containing protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.973
B7463_g12138	B7463_g5222	A0A3E2GSZ5	A0A3E2HCH6	Pan3_PK domain-containing protein.	Uncharacterized protein.	0.942
B7463_g12138	B7463_g856	A0A3E2GSZ5	A0A3E2HQF2	Pan3_PK domain-containing protein.	Exonuclease domain-containing protein.	0.919
B7463_g1984	B7463_g12138	A0A3E2HLP1	A0A3E2GSZ5	Exonuclease domain-containing protein.	Pan3_PK domain-containing protein.	0.919
B7463_g1984	B7463_g2123	A0A3E2HLP1	A0A3E2HLD4	Exonuclease domain-containing protein.	Exonuclease domain-containing protein.	0.765
B7463_g1984	B7463_g2308	A0A3E2HLP1	A0A3E2HKV6	Exonuclease domain-containing protein.	Uncharacterized protein.	0.688
B7463_g1984	B7463_g25	A0A3E2HLP1	A0A3E2HS73	Exonuclease domain-containing protein.	Uncharacterized protein.	0.780
B7463_g1984	B7463_g3742	A0A3E2HLP1	A0A3E2HGX1	Exonuclease domain-containing protein.	Ipi1_N domain-containing protein.	0.633
B7463_g1984	B7463_g4671	A0A3E2HLP1	A0A3E2HE32	Exonuclease domain-containing protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.689
B7463_g1984	B7463_g5222	A0A3E2HLP1	A0A3E2HCH6	Exonuclease domain-containing protein.	Uncharacterized protein.	0.689
B7463_g1984	B7463_g6651	A0A3E2HLP1	A0A3E2H942	Exonuclease domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.875
B7463_g1984	B7463_g6851	A0A3E2HLP1	A0A3E2H7W6	Exonuclease domain-containing protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.692
B7463_g1984	B7463_g856	A0A3E2HLP1	A0A3E2HQF2	Exonuclease domain-containing protein.	Exonuclease domain-containing protein.	0.765
B7463_g2123	B7463_g12138	A0A3E2HLD4	A0A3E2GSZ5	Exonuclease domain-containing protein.	Pan3_PK domain-containing protein.	0.919
B7463_g2123	B7463_g1984	A0A3E2HLD4	A0A3E2HLP1	Exonuclease domain-containing protein.	Exonuclease domain-containing protein.	0.765
B7463_g2123	B7463_g2308	A0A3E2HLD4	A0A3E2HKV6	Exonuclease domain-containing protein.	Uncharacterized protein.	0.688
B7463_g2123	B7463_g25	A0A3E2HLD4	A0A3E2HS73	Exonuclease domain-containing protein.	Uncharacterized protein.	0.780
B7463_g2123	B7463_g3742	A0A3E2HLD4	A0A3E2HGX1	Exonuclease domain-containing protein.	Ipi1_N domain-containing protein.	0.662