B7463_g1747 protein (Scytalidium lignicola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B7463_g1747

Uncharacterized protein. (834 aa)

Predicted Functional Partners:

B7463_g1723

0.996

B7463_g6651

0.944

B7463_g965

0.878

B7463_g5439

0.871

B7463_g2860

0.854

B7463_g1702

0.852

B7463_g12250

0.837

B7463_g9692

0.826

B7463_g6309

0.818

B7463_g6656

0.816

Your Current Organism:

Scytalidium lignicola

NCBI taxonomy Id: 5539
Other names: CBS 233.57, IMI 062532, MUCL 4172, S. lignicola, UAMH 385

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B7463_g12250	B7463_g1747	A0A3E2GSP0	A0A3E2HMN5	Uncharacterized protein.	Uncharacterized protein.	0.837
B7463_g12250	B7463_g2860	A0A3E2GSP0	A0A3E2HJ86	Uncharacterized protein.	Uncharacterized protein.	0.999
B7463_g1702	B7463_g1723	A0A3E2HMX2	A0A3E2HMQ6	Uncharacterized protein.	3'-5' exonuclease domain-containing protein.	0.977
B7463_g1702	B7463_g1747	A0A3E2HMX2	A0A3E2HMN5	Uncharacterized protein.	Uncharacterized protein.	0.852
B7463_g1702	B7463_g5439	A0A3E2HMX2	A0A3E2HBT5	Uncharacterized protein.	Mre11_DNA_bind domain-containing protein; Belongs to the MRE11/RAD32 family.	0.542
B7463_g1702	B7463_g6309	A0A3E2HMX2	A0A3E2H989	Uncharacterized protein.	RECA_2 domain-containing protein.	0.722
B7463_g1702	B7463_g6651	A0A3E2HMX2	A0A3E2H942	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.996
B7463_g1702	B7463_g6656	A0A3E2HMX2	A0A3E2H8Z7	Uncharacterized protein.	Uncharacterized protein.	0.721
B7463_g1702	B7463_g965	A0A3E2HMX2	A0A3E2HPR0	Uncharacterized protein.	Uncharacterized protein.	0.786
B7463_g1723	B7463_g1702	A0A3E2HMQ6	A0A3E2HMX2	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.977
B7463_g1723	B7463_g1747	A0A3E2HMQ6	A0A3E2HMN5	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.996
B7463_g1723	B7463_g2860	A0A3E2HMQ6	A0A3E2HJ86	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.550
B7463_g1723	B7463_g5439	A0A3E2HMQ6	A0A3E2HBT5	3'-5' exonuclease domain-containing protein.	Mre11_DNA_bind domain-containing protein; Belongs to the MRE11/RAD32 family.	0.997
B7463_g1723	B7463_g6309	A0A3E2HMQ6	A0A3E2H989	3'-5' exonuclease domain-containing protein.	RECA_2 domain-containing protein.	0.997
B7463_g1723	B7463_g6651	A0A3E2HMQ6	A0A3E2H942	3'-5' exonuclease domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.999
B7463_g1723	B7463_g6656	A0A3E2HMQ6	A0A3E2H8Z7	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.791
B7463_g1723	B7463_g965	A0A3E2HMQ6	A0A3E2HPR0	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.993
B7463_g1723	B7463_g9692	A0A3E2HMQ6	A0A3E2GZS0	3'-5' exonuclease domain-containing protein.	Adenylate kinase/Adenosinetriphosphatase/Nucleoside-triphosphate phosphatase.	0.989
B7463_g1747	B7463_g12250	A0A3E2HMN5	A0A3E2GSP0	Uncharacterized protein.	Uncharacterized protein.	0.837
B7463_g1747	B7463_g1702	A0A3E2HMN5	A0A3E2HMX2	Uncharacterized protein.	Uncharacterized protein.	0.852