STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7463_g759Lysine--tRNA ligase. (569 aa)    
Predicted Functional Partners:
B7463_g1819
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.972
B7463_g10349
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.964
B7463_g9266
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.946
B7463_g11409
AA_TRNA_LIGASE_II domain-containing protein.
  
 0.941
B7463_g8103
Uncharacterized protein.
  
 0.940
B7463_g3436
Uncharacterized protein.
   
 0.920
B7463_g1404
tRNA-synt_1c domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.916
B7463_g11240
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.915
B7463_g7249
Uncharacterized protein.
  
 
 0.883
B7463_g5494
RF_PROK_I domain-containing protein.
  
 
 0.883
Your Current Organism:
Scytalidium lignicola
NCBI taxonomy Id: 5539
Other names: CBS 233.57, IMI 062532, MUCL 4172, S. lignicola, UAMH 385
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