STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEG75146.1ATPase, AAA family; KEGG: ava:Ava_B0112 5.1e-121 ATPase K00961:K07478; Psort location: Cytoplasmic, score: 8.87. (438 aa)    
Predicted Functional Partners:
tcdA
ThiF family protein; KEGG: cal:orf19.2115 1.2e-22 molybdopterin-converting factor; Psort location: Cytoplasmic, score: 8.87.
       0.795
EEG75148.1
Polysaccharide deacetylase; KEGG: spr:spr1333 1.3e-37 pgdA; peptidoglycan GlcNAc deacetylase K01463; Psort location: Cytoplasmic, score: 9.98.
  
    0.733
recQ
ATP-dependent DNA helicase RecQ; KEGG: cac:CAC2687 1.1e-148 recQ; RecQ protein, superfamily II DNA helicase K03654; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.730
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
    0.598
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
  
 0.585
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 
 0.570
cinA_2
Competence/damage-inducible domain protein CinA; KEGG: mmu:319945 1.5e-07 Flad1; RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) K00953; Psort location: Cytoplasmic, score: 8.87; Belongs to the CinA family.
     
 0.514
dnaX_2
Putative DNA polymerase III, subunit gamma and tau; KEGG: tte:TTE0097 2.2e-49 holB; ATPase involved in DNA replication K02341; Psort location: Cytoplasmic, score: 8.87.
   
   0.510
mepA_9
MATE efflux family protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.419
Your Current Organism:
Clostridium hylemonae
NCBI taxonomy Id: 553973
Other names: Clostridium hylemonae CCUG 45367, Clostridium hylemonae CIP 106689, Clostridium hylemonae DSM 15053, Clostridium hylemonae JCM 10539, Clostridium hylemonae TN-271, [. hylemonae DSM 15053, [Clostridium] hylemonae DSM 15053
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