STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEG73763.1ABC transporter, substrate-binding protein, family 5; KEGG: shn:Shewana3_2650 3.1e-23 acetate kinase K00925; Psort location: Cellwall, score: 9.17. (562 aa)    
Predicted Functional Partners:
EEG73761.1
ABC transporter, permease protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.976
ddpB_3
ABC transporter, permease protein; KEGG: syf:Synpcc7942_2454 1.7e-33 adenine phosphoribosyltransferase K00759; Psort location: CytoplasmicMembrane, score: 10.00.
 0.975
oppD_3
KEGG: cch:Cag_1883 1.1e-59 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; Psort location: CytoplasmicMembrane, score: 9.49.
 
 
 0.940
oppF_3
KEGG: reh:H16_B0716 4.7e-70 dppF3; ABC-type transporter, ATPase component: PepT family; Psort location: CytoplasmicMembrane, score: 9.49.
 
 
 0.929
ddpC_1
ABC transporter, permease protein; KEGG: lwe:lwe1444 0.00069 opuCB; glycine betaine/L-proline ABC transporter, permease protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.925
gsiD
ABC transporter, permease protein; KEGG: lwe:lwe1444 0.0019 opuCB; glycine betaine/L-proline ABC transporter, permease protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.923
ddpB_2
ABC transporter, permease protein; KEGG: syf:Synpcc7942_2454 3.0e-29 adenine phosphoribosyltransferase K00759; Psort location: CytoplasmicMembrane, score: 10.00.
 0.922
ddpB_1
KEGG: rha:RHA1_ro09047 7.6e-47 ABC peptide transporter, permease component K02033; Psort location: CytoplasmicMembrane, score: 9.99.
 0.919
oppC_2
KEGG: rha:RHA1_ro09047 1.0e-05 ABC peptide transporter, permease component K02033; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.915
nikB
KEGG: rha:RHA1_ro09047 4.8e-45 ABC peptide transporter, permease component K02033; Psort location: CytoplasmicMembrane, score: 10.00.
 0.914
Your Current Organism:
Clostridium hylemonae
NCBI taxonomy Id: 553973
Other names: Clostridium hylemonae CCUG 45367, Clostridium hylemonae CIP 106689, Clostridium hylemonae DSM 15053, Clostridium hylemonae JCM 10539, Clostridium hylemonae TN-271, [. hylemonae DSM 15053, [Clostridium] hylemonae DSM 15053
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