STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yohKPutative TIGR00659 family protein; KEGG: bcz:BCZK3376 2.9e-31 murein hydrolase export regulator K01238; Psort location: CytoplasmicMembrane, score: 9.97. (225 aa)    
Predicted Functional Partners:
cidA
LrgA family protein; KEGG: btk:BT9727_5121 2.8e-08 membrane protein; possible murein hydrolase exporter K05338; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.994
mog_1
Molybdenum cofactor synthesis domain protein; KEGG: hpa:HPAG1_0784 4.3e-21 molybdopterin biosynthesis protein.
       0.601
EEG73322.1
Hypothetical protein; KEGG: fnu:FN1387 1.0e-33 metal dependent hydrolase; Psort location: Cytoplasmic, score: 8.87.
       0.593
rnhA
Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
     
 0.579
ypdB_4
Response regulator receiver domain protein; KEGG: rru:Rru_A0376 2.6e-21 transcriptional regulator, LytR/AlgR family K07705; Psort location: Cytoplasmic, score: 8.87.
    
 0.569
spoIVA
Stage IV sporulation protein A; Psort location: Cytoplasmic, score: 8.87.
       0.486
Your Current Organism:
Clostridium hylemonae
NCBI taxonomy Id: 553973
Other names: Clostridium hylemonae CCUG 45367, Clostridium hylemonae CIP 106689, Clostridium hylemonae DSM 15053, Clostridium hylemonae JCM 10539, Clostridium hylemonae TN-271, [. hylemonae DSM 15053, [Clostridium] hylemonae DSM 15053
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