STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OMH29573.1RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (179 aa)    
Predicted Functional Partners:
OMH29566.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.811
OMH29565.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.649
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.556
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.538
OMH29001.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.516
OMH24118.1
Mycothiol system anti-sigma-R factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.516
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.485
OMH24821.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.469
OMH29574.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.437
OMH23136.1
TIGR02677 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.425
Your Current Organism:
Tersicoccus phoenicis
NCBI taxonomy Id: 554083
Other names: Arthrobacter sp. 1P05MA, Arthrobacter sp. KO_PS43, DSM 30849, NRRL B-59547, T. phoenicis, Tersicoccus phoenicis Vaishampayan et al. 2013, strain 1P05MA
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