Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KRU23411.1Beta-carotene 15,15'-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)    
Predicted Functional Partners:
KRU23410.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
0.969
KRU23418.1
Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.967
KRU23413.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.859
KRU23197.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.796
KRU21358.1
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.500
KRU22113.1
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.479
KRU23390.1
Type II secretion system protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.468
KRU21919.1
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.454
KRU23147.1
Peptidase M15A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.453
KRU21746.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.446
Your Current Organism:
Psychrobacter piscatorii
NCBI taxonomy Id: 554343
Other names: JCM 15603, NCIMB 14510, P. piscatorii, Psychrobacter piscatorii Yumoto et al. 2010, Psychrobacter sp. JCM 15603, Psychrobacter sp. T-3-2, strain T-3-2
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