Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
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Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Toce_0026NurA domain protein; InterPro IPR018977; KEGG: bcl:ABC0059 hypothetical protein; PFAM: NurA domain; SPTR: NurA domain superfamily; PFAM: NurA domain. (318 aa)    
Predicted Functional Partners:
Toce_0027
Conserved hypothetical protein; COGs: COG0433 ATPase; InterPro IPR002543; KEGG: bha:BH0052 hypothetical protein; SPTR: BH0052 protein; PFAM: Domain of unknown function DUF87.
   
 
 0.939
Toce_0025
Transcriptional regulator, AbrB family; InterPro IPR006339:IPR007159; KEGG: cac:CAC3647 transition state regulatory protein AbrB; PFAM: SpoVT/AbrB domain protein; SPTR: Transition state regulatory protein AbrB; TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family.
       0.579
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.547
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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