STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0032Protein of unknown function DUF458; COGs: COG1978 conserved hypothetical protein; InterPro IPR007405; KEGG: mta:Moth_0053 hypothetical protein; PFAM: protein of unknown function DUF458; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF458). (156 aa)    
Predicted Functional Partners:
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
       0.704
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.627
Toce_0030
InterPro IPR007197; KEGG: drm:Dred_1747 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily.
     
 0.553
Toce_0029
Hydrolase, TatD family; COGs: COG0084 Mg-dependent DNase; InterPro IPR012278:IPR015991:IPR001130; KEGG: tit:Thit_0099 hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; SPTR: Hydrolase, TatD family; TIGRFAM: hydrolase, TatD family; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family.
       0.549
Toce_0899
Membrane protein of unknown function; InterPro IPR007165; KEGG: mta:Moth_0580 hypothetical protein; PFAM: membrane protein of unknown function; SPTR: Putative uncharacterized protein; PFAM: Membrane protein of unknown function.
  
     0.457
Toce_0779
3D domain protein; COGs: COG3583 conserved hypothetical protein; InterPro IPR011098:IPR007137:IPR010611; KEGG: mta:Moth_0051 hypothetical protein; PFAM: 3D domain protein; G5 domain protein; protein of unknown function DUF348; SPTR: Putative uncharacterized protein; PFAM: 3D domain; Domain of unknown function (DUF348); G5 domain.
       0.422
Toce_0036
Protein of unknown function DUF1021; COGs: COG4466 Uncharacterized protein; InterPro IPR009366; KEGG: amt:Amet_4610 hypothetical protein; PFAM: protein of unknown function DUF1021; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1021).
 
     0.410
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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