Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
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Toce_0035SpoIID/LytB domain protein; COGs: COG2385 Sporulation protein and related protein; InterPro IPR014225:IPR013486:IPR013693:IPR002508; KEGG: aoe:Clos_0281 SpoIID/LytB domain-containing protein; PFAM: cell wall hydrolase/autolysin; Stage II sporulation D domain protein; SMART: cell wall hydrolase/autolysin; SPTR: SpoIID/LytB domain; TIGRFAM: SpoIID/LytB domain protein; stage II sporulation protein D; PFAM: N-acetylmuramoyl-L-alanine amidase; Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain; stage II sporulation protein D. (479 aa)    
Predicted Functional Partners:
Toce_0034
Sporulation peptidase YabG; InterPro IPR008764; KEGG: dhd:Dhaf_0082 sporulation peptidase YabG; PFAM: peptidase U57 YabG; SPTR: Sporulation peptidase YabG; TIGRFAM: sporulation peptidase YabG; PFAM: YabG peptidase U57; TIGRFAM: sporulation peptidase YabG.
     
 0.754
Toce_0619
Rhomboid family protein; COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: tpd:Teth39_1878 rhomboid family protein; PFAM: Rhomboid family protein; SPTR: Rhomboid family protein; PFAM: Rhomboid family.
   
   0.651
Toce_0918
Sporulation protein YqfD; InterPro IPR010690; KEGG: tte:TTE0969 stage IV sporulation protein; PFAM: putative stage IV sporulation YqfD; SPTR: Stage IV sporulation protein; TIGRFAM: sporulation protein YqfD; PFAM: Putative stage IV sporulation protein YqfD; TIGRFAM: sporulation protein YqfD.
  
  
 0.630
Toce_0946
COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005543:IPR005311:IPR001460:IPR011927; KEGG: hor:Hore_09030 stage V sporulation protein D; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; PRIAM: Peptidoglycan glycosyltransferase; SMART: PASTA domain containing protein; SPTR: Stage V sporulation protein D; TIGRFAM: stage V sporulation protein D; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; PASTA domain; TIGRFAM: sta [...]
 
  
 0.615
Toce_0980
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.615
Toce_0040
Spore coat assembly protein SafA; InterPro IPR014248:IPR018392:IPR002482; KEGG: hor:Hore_21410 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: Peptidoglycan-binding LysM; TIGRFAM: spore coat assembly protein SafA; PFAM: LysM domain; TIGRFAM: spore coat assembly protein SafA.
 
  
 0.602
Toce_1339
COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460; KEGG: tit:Thit_1052 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; SPTR: Peptidoglycan glycosyltransferase; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain.
 
  
 0.577
Toce_0487
O-antigen polymerase; InterPro IPR019734:IPR013026:IPR007016; KEGG: tte:TTE0644 TPR repeat-containing protein; PFAM: O-antigen polymerase; SPTR: TPR-repeat-containing proteins; PFAM: O-Antigen ligase.
 
    0.550
cinA
Competence/damage-inducible protein cinA; COGs: COG1058 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; InterPro IPR001453:IPR008136:IPR008135; KEGG: dtu:Dtur_0064 competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; SPTR: CinA-like protein; TIGRFAM: competence/damage-inducible protein CinA; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor [...]
 
   
 0.538
Toce_0033
InterPro IPR001173; KEGG: adg:Adeg_2109 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase, family 2; PFAM: Glycosyl transferase family 2.
       0.536
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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