Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Toce_0038SCP-like extracellular; COGs: COG2340 Uncharacterized protein with SCP/PR1 domains; InterPro IPR014258:IPR014044; KEGG: pth:PTH_2171 hypothetical protein; PFAM: SCP-like extracellular; SPTR: Uncharacterized protein; PFAM: Cysteine-rich secretory protein family; TIGRFAM: uncharacterized protein, YkwD family. (226 aa)    
Predicted Functional Partners:
Toce_1003
KEGG: drm:Dred_2125 Ig domain-containing protein; SPTR: Ig domain protein, group 2 domain protein.
  
  
 0.715
Toce_0037
KEGG: mta:Moth_0200 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.521
Toce_0040
Spore coat assembly protein SafA; InterPro IPR014248:IPR018392:IPR002482; KEGG: hor:Hore_21410 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: Peptidoglycan-binding LysM; TIGRFAM: spore coat assembly protein SafA; PFAM: LysM domain; TIGRFAM: spore coat assembly protein SafA.
 
    0.493
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
  
   0.468
Toce_1000
KEGG: drm:Dred_2129 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Terminase-like family.
   
    0.461
Toce_0039
KEGG: bfo:BRAFLDRAFT_74208 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.444
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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