STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0090Extracellular solute-binding protein family 1; COGs: COG4134 ABC-type uncharacterized transport system periplasmic component; InterPro IPR006059; KEGG: amt:Amet_3295 putative ABC transporter solute-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: Extracellular solute-binding protein, putative; PFAM: Bacterial extracellular solute-binding protein. (418 aa)    
Predicted Functional Partners:
Toce_0092
Binding-protein-dependent transport systems inner membrane component; COGs: COG1177 ABC-type spermidine/putrescine transport system permease component II; InterPro IPR000515; KEGG: amt:Amet_3293 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  
  0.995
Toce_0091
COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: amt:Amet_3294 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  
  0.994
Toce_0093
ABC transporter related protein; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003439:IPR013611:IPR003593:IPR017871; KEGG: amt:Amet_3292 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter; TOBE domain.
 
  
  0.985
Toce_0089
InterPro IPR000462; KEGG: amt:Amet_3296 CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.954
Toce_0088
SNARE associated Golgi protein-related protein; COGs: COG0398 conserved hypothetical protein; InterPro IPR015414; KEGG: vfi:VF_A0098 inner membrane protein; PFAM: SNARE associated Golgi protein; SPTR: Putative membrane protein; PFAM: SNARE associated Golgi protein.
 
  
 0.939
Toce_0087
Rhodanese domain protein; COGs: COG2897 Rhodanese-related sulfurtransferase; InterPro IPR001763:IPR001307; KEGG: ttr:Tter_1312 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Thiosulfate sulfurtransferase; PFAM: Rhodanese-like domain.
 
  
 0.797
Toce_0086
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR013027:IPR004017:IPR000759:IPR017900; KEGG: vpa:VP1199 putative glutamate synthase, small chain; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: Pyridine nucleotide-disulphide oxidoreductase family protein; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Cysteine-rich domain.
 
     0.785
Toce_0094
Hypothetical protein; KEGG: ecb:100065379 hephaestin; SPTR: Putative uncharacterized protein.
       0.485
Toce_0085
InterPro IPR007272; KEGG: tit:Thit_0078 protein of unknown function DUF395 YeeE/YedE; PFAM: protein of unknown function DUF395 YeeE/YedE; SPTR: Putative uncharacterized protein; PFAM: YeeE/YedE family (DUF395).
       0.407
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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