STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0171KEGG: gem:GM21_2624 hypothetical protein; SPTR: Putative uncharacterized protein. (61 aa)    
Predicted Functional Partners:
Toce_0169
Small GTP-binding protein; COGs: COG0370 Fe2+ transport system protein B; InterPro IPR005225:IPR002917:IPR006073; KEGG: geo:Geob_2253 ferrous iron transport protein B; PFAM: GTP-binding protein HSR1-related; SPTR: Ferrous iron transport protein B; TIGRFAM: small GTP-binding protein; PFAM: Ferrous iron transport protein B; TIGRFAM: small GTP-binding protein domain.
  
  
 0.886
Toce_0170
COGs: COG0370 Fe2+ transport system protein B; InterPro IPR011619:IPR011642:IPR011640; KEGG: gem:GM21_2625 ferrous iron transport protein B; PFAM: Ferrous iron transport protein B domain protein; nucleoside recognition domain protein; Ferrous iron transport B domain protein; SPTR: Ferrous iron transport protein B; PFAM: Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB.
  
  
 0.886
Toce_0172
FeoA family protein; InterPro IPR007167; KEGG: chy:CHY_2108 FeoA family protein; PFAM: FeoA family protein; SPTR: FeoA family protein; PFAM: FeoA domain.
       0.773
Toce_0203
InterPro IPR011642; KEGG: amt:Amet_1017 nucleoside recognition domain-containing protein; PFAM: nucleoside recognition domain protein; SPTR: Nucleoside recognition domain protein; PFAM: Nucleoside recognition.
  
  
 0.522
Toce_0204
InterPro IPR011642; KEGG: amt:Amet_1016 nucleoside recognition domain-containing protein; PFAM: nucleoside recognition domain protein; SPTR: Nucleoside recognition domain protein; PFAM: Nucleoside recognition.
  
  
 0.522
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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