STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0183Transcriptional regulator, ArsR family; COGs: COG0640 transcriptional regulator protein; InterPro IPR001845; KEGG: cth:Cthe_1112 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family. (112 aa)    
Predicted Functional Partners:
Toce_0575
Protein-tyrosine phosphatase, low molecular weight; COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: sul:SYO3AOP1_0933 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: Protein ArsC; PFAM: Low molecular weight phosphotyrosine protein phosphatase; TIGRFAM: arsenate reductase (thioredoxin).
  
  
 0.712
Toce_0184
InterPro IPR010712; KEGG: amt:Amet_1829 arsenical resistance operon trans-acting repressor ArsD; PFAM: Arsenical resistance operon trans-acting repressor ArsD; SPTR: Arsenical resistance operon trans-acting repressor ArsD; PFAM: Arsenical resistance operon trans-acting repressor ArsD.
     
 0.616
Toce_0185
Arsenite efflux ATP-binding protein ArsA (TC 3.A.4.1.1); COGs: COG0003 ATPase involved in chromosome partitioning; InterPro IPR003348; KEGG: amt:Amet_1830 arsenite-activated ATPase ArsA; PRIAM: Arsenite-transporting ATPase; SPTR: Arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase (arsA).
     
 0.578
Toce_0186
Arsenite efflux ATP-binding protein ArsA (TC 3.A.4.1.1); COGs: COG0003 ATPase involved in chromosome partitioning; InterPro IPR003348; KEGG: amt:Amet_1831 arsenite-activated ATPase ArsA; PRIAM: Arsenite-transporting ATPase; SPTR: Arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase (arsA).
     
 0.578
Toce_1973
Arsenical-resistance protein; COGs: COG0798 Arsenite efflux pump ACR3 and related permease; InterPro IPR004706:IPR002657; KEGG: cth:Cthe_1111 bile acid:sodium symporter; PFAM: Bile acid:sodium symporter; SPTR: Arsenical-resistance protein; TIGRFAM: arsenical-resistance protein; PFAM: Sodium Bile acid symporter family; TIGRFAM: arsenical-resistance protein.
  
  
 0.471
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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