STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0188Integrase catalytic region; COGs: COG4584 Transposase and inactivated derivatives; InterPro IPR001584:IPR000169:IPR017894; KEGG: chy:CHY_1117 ISChy4, transposase; PFAM: Integrase catalytic region; SPTR: ISChy4, transposase; PFAM: Mu transposase, C-terminal; Integrase core domain. (409 aa)    
Predicted Functional Partners:
Toce_0189
IstB transposition helper protein; COGs: COG1484 DNA replication protein; InterPro IPR002611:IPR001270:IPR003593; KEGG: chy:CHY_1116 ISChy4, transposition helper protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; SPTR: ISChy4, transposition helper protein; PFAM: IstB-like ATP binding protein.
   0.954
Toce_1290
IstB transposition helper protein; COGs: COG1484 DNA replication protein; InterPro IPR002611:IPR003593:IPR001270; KEGG: chy:CHY_1116 ISChy4, transposition helper protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; SPTR: ISChy4, transposition helper protein; PFAM: IstB-like ATP binding protein.
   0.809
Toce_1632
IstB transposition helper protein; COGs: COG1484 DNA replication protein; InterPro IPR002611:IPR001270:IPR003593; KEGG: chy:CHY_1116 ISChy4, transposition helper protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; SPTR: ISChy4, transposition helper protein; PFAM: IstB-like ATP binding protein.
   0.809
Toce_1954
IstB transposition helper protein; COGs: COG1484 DNA replication protein; InterPro IPR003593:IPR001270:IPR002611; KEGG: chy:CHY_1116 ISChy4, transposition helper protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; SPTR: ISChy4, transposition helper protein; PFAM: IstB-like ATP binding protein.
   0.809
Toce_0187
KEGG: amt:Amet_1832 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.407
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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