Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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Toce_0196SNARE associated Golgi protein-related protein; COGs: COG1238 membrane protein; InterPro IPR015414; KEGG: drm:Dred_2300 hypothetical protein; PFAM: SNARE associated Golgi protein; SPTR: Putative uncharacterized protein; PFAM: SNARE associated Golgi protein. (194 aa)    
Predicted Functional Partners:
Toce_0194
Binding-protein-dependent transport systems inner membrane component; COGs: COG4662 ABC-type tungstate transport system periplasmic component; InterPro IPR000515; KEGG: gur:Gura_3543 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
       0.535
Toce_0195
ABC transporter related protein; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003439:IPR003593:IPR017871; KEGG: mta:Moth_0069 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter.
       0.535
Toce_0193
Extracellular solute-binding protein; COGs: COG2998 ABC-type tungstate transport system permease component; KEGG: mta:Moth_0067 extracellular solute-binding protein; SPTR: Extracellular solute-binding protein, family 1.
       0.500
Toce_0197
S-layer domain protein; InterPro IPR001119; KEGG: tit:Thit_0105 S-layer domain protein; PFAM: S-layer domain protein; SPTR: S-layer domain protein; PFAM: S-layer homology domain.
       0.468
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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