STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0205COGs: COG1966 Carbon starvation protein predicted membrane protein; InterPro IPR003706; KEGG: cbl:CLK_3760 carbon starvation protein CstA; PFAM: carbon starvation protein CstA; SPTR: Carbon starvation protein CstA; PFAM: Carbon starvation protein CstA. (539 aa)    
Predicted Functional Partners:
Toce_0206
KEGG: tpd:Teth39_0430 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.853
Toce_0207
Signal transduction histidine kinase, LytS; COGs: COG3275 Putative regulator of cell autolysis; InterProIPR011620:IPR003018:IPR010559:IPR003594:IPR 005467; KEGG: amt:Amet_1377 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; GAF domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; SPTR: Signal transduction histidine kinase, LytS; PFAM: Histidine kinase; 5TMR of 5TMR-LYT; GAF domain; Histidine kinase-, DNA gyrase B-, and H [...]
 
   
 0.591
Toce_0208
Two component transcriptional regulator, LytTR family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: adg:Adeg_0898 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; SPTR: Transcriptional regulator, LytR/AlgR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain.
 
   
 0.580
Toce_1872
Monosaccharide ABC transporter membrane protein, CUT2 family; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: tte:TTE0764 ribose/xylose/arabinose/galactoside ABC-type transporter permease; PFAM: inner-membrane translocator; SPTR: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; PFAM: Branched-chain amino acid transport system / permease component.
   
    0.443
Toce_0279
COGs: COG2764 conserved hypothetical protein; KEGG: cth:Cthe_0331 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
   
    0.412
Toce_0204
InterPro IPR011642; KEGG: amt:Amet_1016 nucleoside recognition domain-containing protein; PFAM: nucleoside recognition domain protein; SPTR: Nucleoside recognition domain protein; PFAM: Nucleoside recognition.
     
 0.402
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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