Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Toce_0223Rubrerythrin; InterPro IPR003251; KEGG: hbu:Hbut_1530 hypothetical protein; PFAM: Rubrerythrin; SPTR: Conserved archaeal protein; PFAM: Rubrerythrin. (91 aa)    
Predicted Functional Partners:
Toce_1146
Conserved hypothetical protein; COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterPro IPR006058; KEGG: tex:Teth514_1576 hypothetical protein; SPTR: Oxidoreductase FAD-binding domain protein.
   
 
 0.623
Toce_2079
Shikimate/quinate 5-dehydrogenase; COGs: COG5322 dehydrogenase; InterPro IPR006151; KEGG: tit:Thit_2042 shikimate/quinate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; SPTR: Shikimate/quinate 5-dehydrogenase; PFAM: Shikimate / quinate 5-dehydrogenase.
   
 
 0.502
Toce_2080
KEGG: tte:TTE2375 hypothetical protein; SPTR: Putative uncharacterized protein.
   
 
 0.502
Toce_0222
Hypothetical protein; KEGG: tte:TTE0062 glycosylase; SPTR: Predicted glycosylase.
       0.490
Toce_0221
methylated-DNA/protein- cysteinemethyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
       0.448
Toce_0224
COGs: COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein); InterPro IPR007210; KEGG: gwc:GWCH70_0298 substrate-binding region of ABC-type glycine betaine transport system; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SPTR: Substrate-binding region of ABC-type glycine betaine transport system; PFAM: Substrate binding domain of ABC-type glycine betaine transport system.
       0.417
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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