STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Toce_0232Cobalamin B12-binding domain protein; InterPro IPR006158; KEGG: tte:TTE0924 methionine synthase I cobalamin-binding subunit; PFAM: cobalamin B12-binding domain protein; SPTR: Methionine synthase I, cobalamin-binding domain protein; PFAM: B12 binding domain. (548 aa)    
Predicted Functional Partners:
Toce_0231
NAD/NADP octopine/nopaline dehydrogenase; COGs: COG0240 Glycerol-3-phosphate dehydrogenase; InterPro IPR004455:IPR003421; KEGG: hor:Hore_09740 NAD/NADP octopine/nopaline dehydrogenase; PFAM: NAD/NADP octopine/nopaline dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; SPTR: NAD/NADP octopine/nopaline dehydrogenase; PFAM: NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus.
 
     0.951
Toce_1484
Methylaspartate mutase; InterPro IPR006230; KEGG: amt:Amet_2372 methylaspartate mutase; SPTR: Methylaspartate mutase; TIGRFAM: conserved hypothetical protein.
     0.586
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
   
   0.531
Toce_1486
D-ornithine 4,5-aminomutase S subunit; KEGG: hor:Hore_21080 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
   0.462
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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