STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0330Peptidase M56 BlaR1; COGs: COG4219 Antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component; InterPro IPR008756; KEGG: dhd:Dhaf_2876 peptidase M56 BlaR1; PFAM: peptidase M56 BlaR1; SPTR: Peptidase M56 BlaR1; PFAM: BlaR1 peptidase M56. (448 aa)    
Predicted Functional Partners:
Toce_0329
Transcriptional repressor, CopY family; COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: cbe:Cbei_1062 CopY family transcriptional regulator; PFAM: Penicillinase repressor; SPTR: Transcriptional repressor, CopY family; PFAM: Penicillinase repressor.
 
  
 0.979
Toce_1738
Protein of unknown function DUF990; COGs: COG3694 ABC-type uncharacterized transport system permease component; InterPro IPR010390; KEGG: sth:STH1199 hypothetical protein; PFAM: protein of unknown function DUF990; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF990).
  
     0.601
Toce_1888
S-layer domain protein; InterPro IPR005075:IPR001119; KEGG: dsy:DSY4050 hypothetical protein; PFAM: S-layer domain protein; Propeptide PepSY amd peptidase M4; SPTR: Putative uncharacterized protein; PFAM: S-layer homology domain; Peptidase propeptide and YPEB domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type.
  
     0.537
Toce_1739
Protein of unknown function DUF990; COGs: COG4587 ABC-type uncharacterized transport system permease component; InterPro IPR010390; KEGG: pjd:Pjdr2_3967 protein of unknown function DUF990; PFAM: protein of unknown function DUF990; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF990).
  
     0.517
Toce_0328
InterPro IPR000620; KEGG: tpd:Teth39_0296 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Putative uncharacterized protein; PFAM: EamA-like transporter family.
  
    0.467
Toce_2232
InterPro IPR018604; KEGG: tit:Thit_2308 protein of unknown function YycH; PFAM: Protein of unknown function YycH; SPTR: Putative uncharacterized protein; PFAM: YycH protein.
  
     0.426
Toce_2007
KEGG: swo:Swol_2165 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.422
Toce_0331
KEGG: tet:TTHERM_00313150 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.410
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.