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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0401Helix-turn-helix domain protein; InterPro IPR001387; KEGG: drm:Dred_0917 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turn-helix. (70 aa)    
Predicted Functional Partners:
Toce_0402
KEGG: tex:Teth514_0704 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.737
Toce_0400
Helix-turn-helix domain protein; InterPro IPR001387; KEGG: ckr:CKR_2925 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Immunity repressor protein; PFAM: Helix-turn-helix.
  
  
 0.574
Toce_0399
Protein of unknown function DUF955; COGs: COG2856 Zn peptidase; InterPro IPR010359; KEGG: cbi:CLJ_B2579 hypothetical immunity region protein 2; PFAM: protein of unknown function DUF955; SPTR: Hypothetical immunity region protein 2; PFAM: Domain of unknown function (DUF955).
  
    0.560
Toce_0403
Hypothetical protein.
       0.509
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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