Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
Toce_0411Type II secretion system F domain protein; InterPro IPR018076; KEGG: rhi:NGR_b03740 pilus assembly protein TadB; PFAM: Type II secretion system F domain; SPTR: Type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain. (274 aa)    
Predicted Functional Partners:
Toce_0409
Type II secretion system protein E; COGs: COG4962 Flp pilus assembly protein ATPase CpaF; InterPro IPR001482; KEGG: csc:Csac_2636 type II secretion system protein E; PFAM: type II secretion system protein E; SPTR: Type II secretion system protein E; PFAM: Type II/IV secretion system protein.
  
  
 0.953
Toce_0415
SAF domain protein; InterPro IPR013974; KEGG: aco:Amico_1202 Flp pilus assembly protein CpaB; PFAM: SAF domain protein; SPTR: SAF domain protein; PFAM: SAF domain; TIGRFAM: Flp pilus assembly protein CpaB.
  
  
 0.928
Toce_0410
KEGG: aoe:Clos_1906 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.762
Toce_0412
KEGG: gbm:Gbem_1059 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.737
Toce_0414
KEGG: csc:Csac_2629 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.620
Toce_0413
KEGG: csc:Csac_2630 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.602
Toce_1541
Protein serine/threonine phosphatase; COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR010822:IPR001932; KEGG: mta:Moth_0392 serine phosphatase; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; SPTR: Serine phosphatase; PFAM: Stage II sporulation protein E (SpoIIE).
   
    0.464
Toce_0416
Protein of unknown function DUF1130; COGs: COG5483 conserved hypothetical protein; KEGG: dal:Dalk_2515 protein of unknown function DUF1130; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF488.
       0.458
Toce_0417
KEGG: tme:Tmel_1110 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.449
Toce_1588
COGs: COG0438 Glycosyltransferase; InterProIPR001296:IPR013216:IPR001173:IPR019734:IPR 013026:IPR000276; KEGG: tnp:Tnap_0554 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; Methyltransferase type 11; glycosyl transferase group 1; SMART: Tetratricopeptide repeat; SPTR: Glycosyl transferase family 2; PFAM: Methyltransferase domain; Glycosyl transferases group 1; Glycosyl transferase family 2.
  
  
 0.419
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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