STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0413KEGG: csc:Csac_2630 hypothetical protein; SPTR: Putative uncharacterized protein. (141 aa)    
Predicted Functional Partners:
Toce_0414
KEGG: csc:Csac_2629 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
Toce_0415
SAF domain protein; InterPro IPR013974; KEGG: aco:Amico_1202 Flp pilus assembly protein CpaB; PFAM: SAF domain protein; SPTR: SAF domain protein; PFAM: SAF domain; TIGRFAM: Flp pilus assembly protein CpaB.
       0.773
Toce_0412
KEGG: gbm:Gbem_1059 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.631
Toce_0411
Type II secretion system F domain protein; InterPro IPR018076; KEGG: rhi:NGR_b03740 pilus assembly protein TadB; PFAM: Type II secretion system F domain; SPTR: Type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain.
       0.602
Toce_0409
Type II secretion system protein E; COGs: COG4962 Flp pilus assembly protein ATPase CpaF; InterPro IPR001482; KEGG: csc:Csac_2636 type II secretion system protein E; PFAM: type II secretion system protein E; SPTR: Type II secretion system protein E; PFAM: Type II/IV secretion system protein.
       0.594
Toce_0410
KEGG: aoe:Clos_1906 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.594
Toce_0416
Protein of unknown function DUF1130; COGs: COG5483 conserved hypothetical protein; KEGG: dal:Dalk_2515 protein of unknown function DUF1130; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF488.
       0.576
Toce_0417
KEGG: tme:Tmel_1110 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.564
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.