Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0424KEGG: tpd:Teth39_0050 hypothetical protein; SPTR: Putative uncharacterized protein. (122 aa)    
Predicted Functional Partners:
Toce_0425
KEGG: tpd:Teth39_0051 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.786
Toce_0426
TRAG family protein; COGs: COG3505 Type IV secretory pathway VirD4 protein; InterPro IPR003688; KEGG: tpd:Teth39_0052 TraG family protein; PFAM: TRAG family protein; SPTR: TRAG family protein; PFAM: TraG/TraD family.
       0.786
Toce_0427
KEGG: tpd:Teth39_0053 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.757
Toce_0428
KEGG: tpd:Teth39_0054 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.594
Toce_0429
KEGG: tpd:Teth39_0055 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.594
Toce_0430
KEGG: tpd:Teth39_0059 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.592
Toce_0431
COGs: COG3451 Type IV secretory pathway VirB4 protein; KEGG: tpd:Teth39_0060 type IV secretory pathway VirB4 components-like protein; SPTR: Type IV secretory pathway VirB4 components-like protein; PFAM: Domain of unknown function DUF87; CagE, TrbE, VirB family, component of type IV transporter system.
       0.592
Toce_0432
Peptidase M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: tpd:Teth39_0061 peptidase M23B; PFAM: Peptidase M23; SPTR: Peptidase M23; PFAM: Peptidase family M23.
       0.592
Toce_0433
KEGG: tpd:Teth39_0047 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.477
Toce_0423
KEGG: tpd:Teth39_0046 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.418
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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