STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0425KEGG: tpd:Teth39_0051 hypothetical protein; SPTR: Putative uncharacterized protein. (829 aa)    
Predicted Functional Partners:
Toce_0426
TRAG family protein; COGs: COG3505 Type IV secretory pathway VirD4 protein; InterPro IPR003688; KEGG: tpd:Teth39_0052 TraG family protein; PFAM: TRAG family protein; SPTR: TRAG family protein; PFAM: TraG/TraD family.
 
     0.953
Toce_0431
COGs: COG3451 Type IV secretory pathway VirB4 protein; KEGG: tpd:Teth39_0060 type IV secretory pathway VirB4 components-like protein; SPTR: Type IV secretory pathway VirB4 components-like protein; PFAM: Domain of unknown function DUF87; CagE, TrbE, VirB family, component of type IV transporter system.
 
   
 0.908
Toce_0430
KEGG: tpd:Teth39_0059 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.904
Toce_0421
Plasmid segregation actin-type ATPase ParM; KEGG: tpd:Teth39_0078 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
 
 0.871
Toce_0454
AAA family ATPase, CDC48 subfamily; COGs: COG0464 ATPase of the AAA+ class; InterProIPR003960:IPR005938:IPR003593:IPR003338:IPR 004201:IPR003959; KEGG: mta:Moth_1594 AAA family ATPase, CDC48 subfamily protein; PFAM: AAA ATPase central domain protein; AAA ATPase VAT domain protein; cell division protein 48 CDC48 domain 2; PRIAM: Adenosinetriphosphatase; SMART: AAA ATPase; SPTR: AAA family ATPase, CDC48 subfamily; TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: Cell division protein 48 (CDC48), N-terminal domain; ATPase family associated with various cellular activities (AAA); Cell di [...]
  
 0.853
Toce_1185
Stage V sporulation protein K; COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003593:IPR000641:IPR003959:IPR014232; KEGG: drm:Dred_1880 ATPase central domain-containing protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: AAA ATPase, central domain protein; TIGRFAM: stage V sporulation protein K; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: probable Rubsico expression protein CbbX; stage V sporulation protein K.
  
 0.853
Toce_0424
KEGG: tpd:Teth39_0050 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.787
Toce_0427
KEGG: tpd:Teth39_0053 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.758
Toce_0432
Peptidase M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: tpd:Teth39_0061 peptidase M23B; PFAM: Peptidase M23; SPTR: Peptidase M23; PFAM: Peptidase family M23.
 
     0.674
Toce_0415
SAF domain protein; InterPro IPR013974; KEGG: aco:Amico_1202 Flp pilus assembly protein CpaB; PFAM: SAF domain protein; SPTR: SAF domain protein; PFAM: SAF domain; TIGRFAM: Flp pilus assembly protein CpaB.
  
     0.667
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.