STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0432Peptidase M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: tpd:Teth39_0061 peptidase M23B; PFAM: Peptidase M23; SPTR: Peptidase M23; PFAM: Peptidase family M23. (311 aa)    
Predicted Functional Partners:
Toce_0430
KEGG: tpd:Teth39_0059 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.835
Toce_0431
COGs: COG3451 Type IV secretory pathway VirB4 protein; KEGG: tpd:Teth39_0060 type IV secretory pathway VirB4 components-like protein; SPTR: Type IV secretory pathway VirB4 components-like protein; PFAM: Domain of unknown function DUF87; CagE, TrbE, VirB family, component of type IV transporter system.
 
     0.815
Toce_0428
KEGG: tpd:Teth39_0054 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.774
Toce_0429
KEGG: tpd:Teth39_0055 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.774
Toce_1110
COGs: COG1776 Chemotaxis protein CheC inhibitor of MCP methylation; InterPro IPR001172:IPR007597:IPR001543:IPR012826; KEGG: tte:TTE1429 flagellar motor switch protein; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; SPTR: Chemotaxis protein CheC, inhibitor of MCP methylation; TIGRFAM: flagellar motor switch protein FliN; PFAM: Surface presentation of antigens (SPOA); CheC-like family; TIGRFAM: flagellar motor switch protein FliN.
   
   0.714
Toce_0425
KEGG: tpd:Teth39_0051 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.674
Toce_0426
TRAG family protein; COGs: COG3505 Type IV secretory pathway VirD4 protein; InterPro IPR003688; KEGG: tpd:Teth39_0052 TraG family protein; PFAM: TRAG family protein; SPTR: TRAG family protein; PFAM: TraG/TraD family.
 
     0.670
Toce_1390
Penicillin-binding protein, 1A family; COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR011816:IPR001264:IPR001460:IPR002119; KEGG: chy:CHY_1563 1A family penicillin-binding protein; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; SPTR: Penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein, 1A family.
  
   
 0.654
Toce_0433
KEGG: tpd:Teth39_0047 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.614
Toce_0427
KEGG: tpd:Teth39_0053 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.613
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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