Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0437KEGG: dae:Dtox_3871 YcfA family protein; SPTR: YcfA family protein. (84 aa)    
Predicted Functional Partners:
Toce_0438
Protein of unknown function UPF0150; InterPro IPR005357; KEGG: pth:PTH_2782 hypothetical protein; PFAM: protein of unknown function UPF0150; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0150).
       0.812
Toce_0439
InterPro IPR012854; KEGG: cth:Cthe_0402 copper amine oxidase-like protein; PFAM: copper amine oxidase domain protein; SPTR: Copper amine oxidase domain protein; PFAM: Copper amine oxidase N-terminal domain.
       0.639
Toce_0440
InterPro IPR000601; KEGG: csc:Csac_2638 PKD domain-containing protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein; SPTR: PKD domain containing protein; PFAM: PKD domain.
       0.529
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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