STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0475InterPro IPR002502; KEGG: dau:Daud_1669 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; SPTR: N-acetylmuramoyl-L-alanine amidase, family 2; PFAM: N-acetylmuramoyl-L-alanine amidase. (169 aa)    
Predicted Functional Partners:
Toce_0476
KEGG: amt:Amet_0721 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.772
Toce_0631
KEGG: tte:TTE0927 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 0.739
Toce_0478
Protein of unknown function DUF1659; InterPro IPR012454; KEGG: mta:Moth_1793 hypothetical protein; PFAM: protein of unknown function DUF1659; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1659).
 
     0.710
Toce_0474
KEGG: amt:Amet_0695 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.709
Toce_0477
KEGG: mta:Moth_1792 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2922).
 
     0.688
Toce_0239
Copper amine oxidase domain protein; COGs: COG3858 glycosyl hydrolase; InterPro IPR012854:IPR001223:IPR011583:IPR001579; KEGG: swo:Swol_1871 glycosyl hydrolase-like protein; PFAM: copper amine oxidase domain protein; glycoside hydrolase family 18; SMART: chitinase II; SPTR: Copper amine oxidase domain protein; PFAM: Copper amine oxidase N-terminal domain; Glycosyl hydrolases family 18; Belongs to the glycosyl hydrolase 18 family.
 
     0.512
Toce_1659
ErfK/YbiS/YcfS/YnhG family protein; COGs: COG1376 conserved hypothetical protein; InterPro IPR005490:IPR002477; KEGG: drm:Dred_2694 ErfK/YbiS/YcfS/YnhG family protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding domain 1 protein; SPTR: ErfK/YbiS/YcfS/YnhG family protein; PFAM: Putative peptidoglycan binding domain; L,D-transpeptidase catalytic domain.
 
  
 0.470
Toce_1696
Glycosidase related protein; COGs: COG2152 glycosylase; InterPro IPR007184; KEGG: swo:Swol_1919 glycosylase-like protein; PFAM: glycosidase related protein; SPTR: Glycosylase-like protein; PFAM: Domain of unknown function (DUF377).
  
     0.417
Toce_0197
S-layer domain protein; InterPro IPR001119; KEGG: tit:Thit_0105 S-layer domain protein; PFAM: S-layer domain protein; SPTR: S-layer domain protein; PFAM: S-layer homology domain.
 
  
 0.413
Toce_2197
Peptidoglycan-binding domain 1 protein; COGs: COG1520 FOG: WD40-like repeat; InterPro IPR018391:IPR002477:IPR002372; KEGG: chl:Chy400_4120 serine/threonine protein kinase; PFAM: Peptidoglycan-binding domain 1 protein; Pyrrolo-quinoline quinone; SPTR: Similar to beta-propeller protein YxaL; PFAM: Putative peptidoglycan binding domain; PQQ enzyme repeat.
 
  
 0.413
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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