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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0477KEGG: mta:Moth_1792 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2922). (73 aa)    
Predicted Functional Partners:
Toce_0478
Protein of unknown function DUF1659; InterPro IPR012454; KEGG: mta:Moth_1793 hypothetical protein; PFAM: protein of unknown function DUF1659; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1659).
 
     0.925
Toce_0476
KEGG: amt:Amet_0721 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.890
Toce_0474
KEGG: amt:Amet_0695 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.772
Toce_0475
InterPro IPR002502; KEGG: dau:Daud_1669 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; SPTR: N-acetylmuramoyl-L-alanine amidase, family 2; PFAM: N-acetylmuramoyl-L-alanine amidase.
 
     0.687
Toce_1333
InterPro IPR012902; KEGG: dae:Dtox_2705 hypothetical protein; SPTR: N-terminal methylation protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
  
     0.615
Toce_0957
Protein of unknown function DUF1290; COGs: COG3856 conserved hypothetical protein (small basic protein); InterPro IPR009709; KEGG: mta:Moth_0848 hypothetical protein; PFAM: protein of unknown function DUF1290; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1290).
  
     0.461
Toce_1228
Sporulation protein, YlmC/YmxH family; InterPro IPR014238; KEGG: bcq:BCQ_3589 PRC-barrel domain superfamily; SPTR: PRC-barrel domain superfamily; TIGRFAM: sporulation protein, YlmC/YmxH family; PFAM: PRC-barrel domain; TIGRFAM: sporulation protein, YlmC/YmxH family.
  
     0.459
Toce_0479
tRNA pseudouridine synthase D TruD; COGs: COG0585 conserved hypothetical protein; InterPro IPR011760:IPR020119:IPR001656; KEGG: csc:Csac_1232 tRNA pseudouridine synthase D, TruD; PFAM: tRNA pseudouridine synthase D TruD; SPTR: tRNA pseudouridine synthase D, TruD; PFAM: tRNA pseudouridine synthase D (TruD); TIGRFAM: conserved hypothetical protein TIGR00094.
 
     0.426
Toce_1171
ATPase; KEGG: cth:Cthe_0434 ATPase; SPTR: ATPase.
  
     0.426
Toce_1656
Purine or other phosphorylase family 1; COGs: COG0775 Nucleoside phosphorylase; InterPro IPR000845; KEGG: dth:DICTH_0360 hypothetical protein; PFAM: purine or other phosphorylase family 1; SPTR: Putative uncharacterized protein; PFAM: Phosphorylase superfamily.
  
     0.422
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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