Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Toce_0514COGs: COG1453 oxidoreductase of the aldo/keto reductase family; InterPro IPR017896:IPR017900:IPR001395:IPR020471; KEGG: mta:Moth_0964 aldo/keto reductase; PFAM: aldo/keto reductase; SPTR: Aldo/keto reductase; PFAM: Aldo/keto reductase family. (318 aa)    
Predicted Functional Partners:
Toce_0237
InterPro IPR009501; KEGG: gur:Gura_4126 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised ACR, YkgG family COG1556.
 
   0.600
Toce_2049
Hypothetical protein; KEGG: cth:Cthe_2522 membrane associated protein; SPTR: Putative uncharacterized protein.
 
     0.486
Toce_0758
Germination protein YpeB; InterPro IPR014239:IPR005075; KEGG: drm:Dred_3194 peptidase; PFAM: Propeptide PepSY amd peptidase M4; SPTR: Propeptide, PepSY amd peptidase M4; TIGRFAM: germination protein YpeB; TIGRFAM: germination protein YpeB.
  
     0.483
Toce_1178
COGs: COG2006 conserved hypothetical protein; InterPro IPR017900:IPR017896; KEGG: csc:Csac_1294 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF362).
 
    0.479
Toce_0869
KEGG: tit:Thit_1631 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.457
sigI
RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; Belongs to the sigma-70 factor family. SigI subfamily.
 
     0.431
Toce_0477
KEGG: mta:Moth_1792 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2922).
  
     0.410
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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