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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0528CRISPR-associated RAMP protein, Csm5 family; COGs: COG1332 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR010173:IPR005537; KEGG: ate:Athe_2700 CRISPR-associated RAMP protein, Csm5 family; PFAM: protein of unknown function DUF324; SPTR: CRISPR-associated RAMP protein, Csm5 family; TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Csm5 family. (373 aa)    
Predicted Functional Partners:
Toce_0527
CRISPR-associated RAMP protein, Csm4 family; COGs: COG1567 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005510:IPR005537; KEGG: tme:Tmel_1673 CRISPR-associated RAMP Csm4 family protein; PFAM: protein of unknown function DUF324; SPTR: CRISPR-associated RAMP protein, Csm4 family; TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Csm4 family.
 
 
 0.998
Toce_0525
InterPro IPR010149; KEGG: csc:Csac_0076 CRISPR-associated Csm2 family protein; PFAM: CRISPR-associated protein TM1810 domain protein; SPTR: CRISPR-associated protein, Csm2 family; TIGRFAM: CRISPR-associated protein, Csm2 family; PFAM: Protein of unknown function (DUF310); TIGRFAM: CRISPR-associated protein, Csm2 family.
 
 
 0.997
Toce_0526
CRISPR-associated protein, Csm3 family; COGs: COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR013412:IPR005537; KEGG: csc:Csac_0077 CRISPR-associated RAMP Csm3 family protein; PFAM: protein of unknown function DUF324; SPTR: CRISPR-associated RAMP protein, Csm3 family; TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Csm3 family.
 
 
 0.997
Toce_0524
CRISPR-associated protein, Csm1 family; COGs: COG1353 hydrolase of the HD superfamily (permuted catalytic motifs); InterPro IPR000160:IPR013408; KEGG: ate:Athe_2704 metal dependent phosphohydrolase; SPTR: Metal dependent phosphohydrolase; TIGRFAM: CRISPR-associated protein, Csm1 family; PFAM: HD domain; TIGRFAM: CRISPR-associated protein, Csm1 family.
 
 
 0.993
Toce_0530
InterPro IPR010171:IPR019016; KEGG: ate:Athe_2714 CRISPR-associated protein, MJ1666 family; PFAM: CRISPR-associated protein DxTHG; SPTR: CRISPR-associated protein, MJ1666 family; TIGRFAM: CRISPR-associated protein, MJ1666 family; PFAM: CRISPR-associated (Cas) DxTHG family; TIGRFAM: CRISPR-associated protein, MJ1666 family.
     
 0.811
Toce_0529
CRISPR-associated protein Cas6; COGs: COG1583 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR010156:IPR002743; KEGG: chy:CHY_2139 CRISPR-associated Cas family protein; PFAM: protein of unknown function DUF57; SPTR: CRISPR-associated protein Cas6; TIGRFAM: CRISPR-associated protein Cas6; PFAM: CRISPR associated protein Cas6; TIGRFAM: CRISPR-associated protein Cas6.
       0.801
Toce_0457
COGs: COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit BcrC/BadD/HgdB; InterPro IPR010327; KEGG: tpd:Teth39_0844 2-hydroxyglutaryl-CoA dehydratase, D-component; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; SPTR: 2-hydroxyglutaryl-CoA dehydratase D-component; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component.
  
     0.679
Toce_0531
InterPro IPR013409; KEGG: dtu:Dtur_0613 CRISPR-associated protein, Csx3 family; PFAM: CRISPR-associated protein Csx3; SPTR: CRISPR-associated protein, Csx3 family; TIGRFAM: CRISPR-associated protein, Csx3 family; PFAM: CRISPR-associated protein (Cas_csx3); TIGRFAM: CRISPR-associated protein, Csx3 family.
       0.642
Toce_1938
DNA polymerase beta domain protein region; InterPro IPR002934; KEGG: chy:CHY_1896 nucleotidyltransferase domain-containing protein; PFAM: DNA polymerase beta domain protein region; SPTR: Nucleotidyltransferase domain protein; PFAM: Nucleotidyltransferase domain.
  
     0.474
Toce_1656
Purine or other phosphorylase family 1; COGs: COG0775 Nucleoside phosphorylase; InterPro IPR000845; KEGG: dth:DICTH_0360 hypothetical protein; PFAM: purine or other phosphorylase family 1; SPTR: Putative uncharacterized protein; PFAM: Phosphorylase superfamily.
  
     0.467
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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