STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0557Flavoprotein; InterPro IPR003382; KEGG: tex:Teth514_1945 hypothetical protein; PFAM: flavoprotein; SPTR: Putative uncharacterized protein; PFAM: Flavoprotein. (260 aa)    
Predicted Functional Partners:
Toce_0559
ATP/cobalamin adenosyltransferase; COGs: COG2096 conserved hypothetical protein; InterPro IPR017858:IPR009221:IPR002779:IPR005624; KEGG: tex:Teth514_1943 ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; protein of unknown function DUF336; PRIAM: Cob(I)yrinic acid a,c-diamide adenosyltransferase; SPTR: ATP--cobalamin adenosyltransferase; TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: Domain of unknown function (DUF336); Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase.
     
 0.841
Toce_0560
COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR012408:IPR015590; KEGG: tex:Teth514_1942 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: Aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family.
  
   0.836
Toce_0558
Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; COGs: COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR004992; KEGG: tex:Teth514_1944 ethanolamine utilization protein EutN/carboxysome structural protein CcmL; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; SPTR: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; PFAM: Ethanolamine utilisation protein EutN/carboxysome.
       0.835
Toce_0556
COGs: COG4820 Ethanolamine utilization protein possible chaperonin; InterPro IPR018181:IPR013366:IPR002731; KEGG: tex:Teth514_1946 ethanolamine utilization protein EutJ family protein; PFAM: ATPase BadF/BadG/BcrA/BcrD type; SPTR: Ethanolamine utilization protein EutJ family protein; TIGRFAM: ethanolamine utilization protein EutJ family protein; PFAM: Hsp70 protein; TIGRFAM: ethanolamine utilization protein EutJ family protein.
       0.825
Toce_0555
Propanediol utilization protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.
       0.716
Toce_0562
Microcompartments protein; COGs: COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR011238:IPR000249; KEGG: tex:Teth514_1939 microcompartments protein; PFAM: microcompartments protein; SPTR: Microcompartments protein; PFAM: BMC domain.
       0.689
Toce_0561
Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; COGs: COG4656 NADH:ubiquinone oxidoreductase subunit RnfC; InterProIPR017896:IPR017900:IPR017054:IPR011538:IPR 019554; KEGG: cbt:CLH_1845 ethanolamine utilization Fe-S center protein eut; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; SPTR: Ethanolamine utilization Fe-S center protein eut; PFAM: Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain.
       0.675
Toce_0554
Microcompartments protein; COGs: COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR000249; KEGG: tex:Teth514_1948 microcompartments protein; PFAM: microcompartments protein; SPTR: Microcompartments protein; PFAM: BMC domain.
       0.673
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
  
  
 0.673
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.657
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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