Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Toce_0597Hypothetical protein; KEGG: hor:Hore_04990 deoxyribodipyrimidine photo-lyase; SPTR: Putative uncharacterized protein. (120 aa)    
Predicted Functional Partners:
Toce_0598
Protein of unknown function DUF1538; InterPro IPR011435; KEGG: bpf:BpOF4_15970 hypothetical protein; PFAM: protein of unknown function DUF1538; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1538).
       0.594
Toce_0596
KEGG: tte:TTE0415 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.504
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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