STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0602Protein of unknown function DUF1538; InterPro IPR011435; KEGG: bpf:BpOF4_15975 hypothetical protein; PFAM: protein of unknown function DUF1538; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1538). (252 aa)    
Predicted Functional Partners:
Toce_0604
PII family protein; InterPro IPR002187; KEGG: chy:CHY_1194 PII family protein; SPTR: PII family protein; PFAM: Nitrogen regulatory protein P-II.
 
     0.950
Toce_0603
PII family protein; InterPro IPR002187; KEGG: chy:CHY_1194 PII family protein; SPTR: Putative uncharacterized protein; PFAM: Nitrogen regulatory protein P-II.
 
     0.947
Toce_0601
Protein of unknown function DUF1538; InterPro IPR011435; KEGG: chy:CHY_1192 hypothetical protein; PFAM: protein of unknown function DUF1538; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1538).
 
    
0.791
Toce_0599
Integrase catalytic region; COGs: COG4584 Transposase and inactivated derivatives; InterPro IPR017894:IPR001584; KEGG: cth:Cthe_1995 hypothetical protein; PFAM: Integrase catalytic region; SPTR: Putative uncharacterized protein; PFAM: Integrase core domain.
       0.592
Toce_0600
IstB domain protein ATP-binding protein; COGs: COG1484 DNA replication protein; InterPro IPR003593:IPR002611; KEGG: cth:Cthe_1996 IstB-like ATP-binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; SPTR: IstB-like ATP-binding protein; PFAM: IstB-like ATP binding protein.
       0.592
Toce_1601
COGs: COG1040 amidophosphoribosyltransferase; KEGG: dal:Dalk_1937 phosphoribosyltransferase; SPTR: Phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein.
   
    0.515
Toce_0399
Protein of unknown function DUF955; COGs: COG2856 Zn peptidase; InterPro IPR010359; KEGG: cbi:CLJ_B2579 hypothetical immunity region protein 2; PFAM: protein of unknown function DUF955; SPTR: Hypothetical immunity region protein 2; PFAM: Domain of unknown function (DUF955).
  
  
 0.511
Toce_0598
Protein of unknown function DUF1538; InterPro IPR011435; KEGG: bpf:BpOF4_15970 hypothetical protein; PFAM: protein of unknown function DUF1538; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1538).
 
    
0.476
Toce_0622
COGs: COG0287 Prephenate dehydrogenase; InterPro IPR003099; KEGG: tpd:Teth39_0985 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; PRIAM: Prephenate dehydrogenase; SPTR: Prephenate dehydrogenase; PFAM: Prephenate dehydrogenase.
  
    0.475
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
   
    0.451
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.