close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0604PII family protein; InterPro IPR002187; KEGG: chy:CHY_1194 PII family protein; SPTR: PII family protein; PFAM: Nitrogen regulatory protein P-II. (112 aa)    
Predicted Functional Partners:
Toce_0601
Protein of unknown function DUF1538; InterPro IPR011435; KEGG: chy:CHY_1192 hypothetical protein; PFAM: protein of unknown function DUF1538; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1538).
 
     0.950
Toce_0602
Protein of unknown function DUF1538; InterPro IPR011435; KEGG: bpf:BpOF4_15975 hypothetical protein; PFAM: protein of unknown function DUF1538; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1538).
 
     0.950
Toce_1168
TPR repeat-containing protein; COGs: COG3063 Tfp pilus assembly protein PilF; InterPro IPR019734:IPR001440:IPR013026; KEGG: mth:MTH72 O-linked GlcNAc transferase; PFAM: TPR repeat-containing protein; SPTR: O-linked GlcNAc transferase; PFAM: Coatomer epsilon subunit; Tetratricopeptide repeat.
    
 
 0.878
Toce_0598
Protein of unknown function DUF1538; InterPro IPR011435; KEGG: bpf:BpOF4_15970 hypothetical protein; PFAM: protein of unknown function DUF1538; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1538).
 
     0.866
Toce_0603
PII family protein; InterPro IPR002187; KEGG: chy:CHY_1194 PII family protein; SPTR: Putative uncharacterized protein; PFAM: Nitrogen regulatory protein P-II.
 
    
0.788
Toce_0894
ADP-ribosylation/Crystallin J1; COGs: COG1397 ADP-ribosylglycohydrolase; InterPro IPR005502; KEGG: sti:Sthe_0600 ADP-ribosylation/crystallin J1; PFAM: ADP-ribosylation/Crystallin J1; SPTR: ADP-ribosylation/Crystallin J1; manually curated; PFAM: ADP-ribosylglycohydrolase.
   
 
 0.756
Toce_0599
Integrase catalytic region; COGs: COG4584 Transposase and inactivated derivatives; InterPro IPR017894:IPR001584; KEGG: cth:Cthe_1995 hypothetical protein; PFAM: Integrase catalytic region; SPTR: Putative uncharacterized protein; PFAM: Integrase core domain.
       0.592
Toce_0600
IstB domain protein ATP-binding protein; COGs: COG1484 DNA replication protein; InterPro IPR003593:IPR002611; KEGG: cth:Cthe_1996 IstB-like ATP-binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; SPTR: IstB-like ATP-binding protein; PFAM: IstB-like ATP binding protein.
       0.592
Toce_0243
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; COGs: COG3383 Uncharacterized anaerobic dehydrogenase; InterProIPR001041:IPR013027:IPR006963:IPR006656:IPR 000759:IPR017900:IPR006655:IPR017896; KEGG: aoe:Clos_0277 molybdopterin oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; ferredoxin; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; SPTR: Molybdopterin oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 domain; TIGRFAM: glutamate synt [...]
  
  
 0.463
Toce_0605
COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR017932:IPR006426:IPR000583:IPR001962; KEGG: tex:Teth514_2106 asparagine synthetase B; PFAM: asparagine synthase; glutamine amidotransferase class-II; SPTR: Asparagine synthase (Glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing).
     
 0.462
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.