STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0619Rhomboid family protein; COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: tpd:Teth39_1878 rhomboid family protein; PFAM: Rhomboid family protein; SPTR: Rhomboid family protein; PFAM: Rhomboid family. (227 aa)    
Predicted Functional Partners:
Toce_1786
Cell wall hydrolase/autolysin; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR012854:IPR002508; KEGG: tit:Thit_0595 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; copper amine oxidase domain protein; SMART: cell wall hydrolase/autolysin; SPTR: N-acetylmuramoyl-L-alanine amidase; PFAM: Copper amine oxidase N-terminal domain; N-acetylmuramoyl-L-alanine amidase; Localisation of periplasmic protein complexes; TIGRFAM: N-acetylmuramoyl-L-alanine amidase CwlD.
   
   0.817
Toce_1824
SPFH domain, Band 7 family protein; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107:IPR001972; KEGG: cpo:COPRO5265_0367 erythrocyte band 7 integral membrane protein; PFAM: band 7 protein; SMART: band 7 protein; SPTR: Erythrocyte band 7 integral membrane protein; PFAM: SPFH domain / Band 7 family.
   
 0.809
Toce_0352
COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: chy:CHY_0730 5-formyltetrahydrofolate cyclo-ligase family protein; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: 5-formyltetrahydrofolate cyclo-ligase family protein; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase.
  
  
 0.713
Toce_0035
SpoIID/LytB domain protein; COGs: COG2385 Sporulation protein and related protein; InterPro IPR014225:IPR013486:IPR013693:IPR002508; KEGG: aoe:Clos_0281 SpoIID/LytB domain-containing protein; PFAM: cell wall hydrolase/autolysin; Stage II sporulation D domain protein; SMART: cell wall hydrolase/autolysin; SPTR: SpoIID/LytB domain; TIGRFAM: SpoIID/LytB domain protein; stage II sporulation protein D; PFAM: N-acetylmuramoyl-L-alanine amidase; Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain; stage II sporulation protein D.
   
   0.651
Toce_0439
InterPro IPR012854; KEGG: cth:Cthe_0402 copper amine oxidase-like protein; PFAM: copper amine oxidase domain protein; SPTR: Copper amine oxidase domain protein; PFAM: Copper amine oxidase N-terminal domain.
   
   0.651
Toce_1795
Cell wall hydrolase/autolysin; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: bmq:BMQ_0173 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; SPTR: Cell wall hydrolase/autolysin; PFAM: N-acetylmuramoyl-L-alanine amidase; TIGRFAM: N-acetylmuramoyl-L-alanine amidase CwlD.
   
   0.651
Toce_0620
InterPro IPR005479; KEGG: cth:Cthe_1443 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2935).
       0.513
rimP
Protein of unknown function DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
      
 0.470
Toce_0980
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
      
 0.466
Toce_1219
Vesicle-fusing ATPase; COGs: COG0465 ATP-dependent Zn protease; InterPro IPR003593:IPR003959:IPR000642:IPR003960; KEGG: hor:Hore_11930 microtubule-severing ATPase; PFAM: AAA ATPase central domain protein; peptidase M41; PRIAM: Vesicle-fusing ATPase; SMART: AAA ATPase; SPTR: Microtubule-severing ATPase; PFAM: Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH; Belongs to the AAA ATPase family.
   
 
 0.443
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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